Browse the genome collection

  • Click on a genome to get to its antismash results.
  • Sort by multiple columns using pressing shift when clicking the sort icon.
  • To help you navigate the amount of columns you can toggle them based on categories.
  • Or reorder them to your liking (although due to the size of the dataset, that can be slow).
  • Global search is enabled with regex. Look for Tara Pacific MAGs with `TARA_`, or use `_MAG_` to select MAGs only or `_REFG_` for reference genomes. To make sure that you only pick up perfect matches, use `$` at the end of the word, e.g. `cluster_1$` will only pick up that cluster and not all numbers starting with 1.
  • Export a filtered table, or after applying visibility contraints as imposed by the Toggle Columns button or selected rows only with the export button. Prior to any export, selected rows should be ticked. To select all rows for export, click the Select All button first.
Genome Collection
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Select Id Genome GTDB Taxonomy Biome Biome Type Host Taxonomy # Biosynthetic Regions # Biosynthetic Products RiPPs RiPPs:Proteusins NRPS PKSI Other PKS Saccharides Terpenes Other Mean Completeness Mean Contamination Differential Coverage Index CheckM Completeness CheckM Contamination CheckM Strain heterogeneity Anvio Completion Anvio Redundancy # tRNAs (AA) 16S rRNA 16S rRNA (partial) # CRISPRs Anvio Domain Specl Species Dereplication Cluster Dereplication Representative Genome Genome size # scaffolds N50 (scaffolds) Longest scaffold Coding density GC Content station depth depth layer latitude longitude date size fraction temperature (°C) oxygen (µmol/kg) detected in the water column